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*** Running 32bit CPDN from 64bit Linux - Discussion ***

*** Running 32bit CPDN from 64bit Linux - Discussion ***

Questions and Answers : Unix/Linux : *** Running 32bit CPDN from 64bit Linux - Discussion ***
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Glenn Carver

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Message 66377 - Posted: 12 Nov 2022, 19:03:17 UTC - in response to Message 66376.  

To be fair, HadSM4 calls the executables from the slot directory and uses that as the working directory, but most of the calls are softlinks: BOINC automatically follows them back to the project directory
I would think there are security concerns and the task has to run in the slot directory and can't see anything above that directory, otherwise I could write malicious code in OpenIFS and go wandering all over your filesystems.

Since I have the entire boinc-client directory on /mnt/d, a HDD, where the model is run shouldn't make a difference. I've created a new WSL Ubuntu instance and I'll ask Andy for a standalone copy of the HadSM4 so I can test it. Maybe there's something weird going on because the HDD is shared between Windows & Ubuntu and the loader gets muddled - I doubt it but I don't know Windows well. Maybe the BIOS doesn't allow 32bit binaries? I could try a openSUSE WSL as well to get away from Debian derivatives.

If I get to the bottom of it, I'll report back here.
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Jean-David Beyer

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Message 66378 - Posted: 12 Nov 2022, 20:06:53 UTC - in response to Message 66377.  

One thing I have never figured out is how CPDN is really organized, because non of my other Boinc projects run this way.
Notice that the processes marked /var/lib/boinc/projects/climateprediction.net/hadsm4_um_8.02_i686-pc are the processes that do most of the actual work. But these processes are not created by the boinc-client. Those are spawned by processes that are created by the boinc-client like ../../projects/climateprediction.net/hadsm4_8.02_i686-pc-linux-gnu hadsm

Why is it necessary for CPDN to have their processes designed this way when none of the other Boinc projects (at least, those I run) find it necessary to do it this way? How is it that none of the other projects use full path names for their working processes when the others start merely ../../
?
    PID    PPID USER      PR  NI S    RES  %MEM  %CPU  P     TIME+ COMMAND                                                                   
 
  64092   64085 boinc     39  19 R 671304   1.0  99.2  7   1165:19 /var/lib/boinc/projects/climateprediction.net/hadsm4_um_8.02_i686-pc-lin+ 
  40484   40482 boinc     39  19 R 670476   1.0  99.3 12   1534:36 /var/lib/boinc/projects/climateprediction.net/hadsm4_um_8.02_i686-pc-lin+ 
  40469   40457 boinc     39  19 R 668508   1.0  99.2  9   1550:12 /var/lib/boinc/projects/climateprediction.net/hadsm4_um_8.02_i686-pc-lin+ 
  40474   40471 boinc     39  19 R 668348   1.0  99.4 14   1548:13 /var/lib/boinc/projects/climateprediction.net/hadsm4_um_8.02_i686-pc-lin+ 
  40480   40476 boinc     39  19 R 668336   1.0  99.0 13   1537:25 /var/lib/boinc/projects/climateprediction.net/hadsm4_um_8.02_i686-pc-lin+ 
                                                         
  40482   16165 boinc     39  19 S  11188   0.0   0.0  8   1:03.26 ../../projects/climateprediction.net/hadsm4_8.02_i686-pc-linux-gnu hadsm+ 
  64085   16165 boinc     39  19 S  11136   0.0   0.0 13   0:49.24 ../../projects/climateprediction.net/hadsm4_8.02_i686-pc-linux-gnu hadsm+ 
  40476   16165 boinc     39  19 S  11104   0.0   0.1 14   1:01.86 ../../projects/climateprediction.net/hadsm4_8.02_i686-pc-linux-gnu hadsm+ 
  40457   16165 boinc     39  19 S  10928   0.0   0.0 13   1:02.17 ../../projects/climateprediction.net/hadsm4_8.02_i686-pc-linux-gnu hadsm+ 
  40471   16165 boinc     39  19 S  10912   0.0   0.1 12   1:03.40 ../../projects/climateprediction.net/hadsm4_8.02_i686-pc-linux-gnu hadsm+ 

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Les Bayliss
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Message 66379 - Posted: 12 Nov 2022, 20:18:34 UTC

cpdn is one of the early projects.
I think that there was SETI, then cpdn.
All other projects came much later, and they apparently had different ideas about how to do things.
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Glenn Carver

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Message 66380 - Posted: 13 Nov 2022, 10:08:54 UTC - in response to Message 66378.  

One thing I have never figured out is how CPDN is really organized, because non of my other Boinc projects run this way.
Notice that the processes marked /var/lib/boinc/projects/climateprediction.net/hadsm4_um_8.02_i686-pc are the processes that do most of the actual work. But these processes are not created by the boinc-client. Those are spawned by processes that are created by the boinc-client like ../../projects/climateprediction.net/hadsm4_8.02_i686-pc-linux-gnu hadsm
Good question. I can explain a bit more what's happening.
There are three processes in play on a client machine, each with a different role, like this:
boinc-client <--> model_wrapper <--> model

Between the client and the actual model, we have this 'wrapper' code. This knows how to talk to the model and it knows how to talk to the boinc client. The client knows nothing about the actual model other than what the wrapper tells it. The model has no clue it's running under boinc (and shouldn't have to).

The wrapper is started by boinc, it does some checks, moves files into place and then starts the model as a separate process. The wrapper is responsible for monitoring model progress, producing the trickles and cleaning up the slot directory at the end. So in your example, the actual model process is hadsm4_um_8.02_i686-pc and the 'wrapper' is the hadsm4_8.02_i686-pc-linux-gnu. The clue is the lack of '_um_', though personally I find the similar names rather confusing.

The advantage of doing it this way is the model code doesn't need any changes related to boinc. We just need to make sure it will run on home PCs. This makes it faster to integrate a new model into the CPDN framework. We could merge the wrapper code into the model itself (maybe this is what other projects do), but that's a bad idea in this project as every time a new model version appears, we potentially have to rewrite the boinc-wrapper part.

The wrapper code for the Hadley models is a little more complicated than OpenIFS because it uses the older 'shared memory' way of transferring information between the two processes. This was done to support the graphics option that used to come with the models. It's this shared memory code that's part of the 32/64bit problem. For OpenIFS, we've got rid of this and rewritten the 'openifs wrapper' to be simpler; communciation is done via files in the slot directory. The eventual aim is to have an 'agnostic' wrapper that doesn't know very much about the model (why should it have to?), which will make it faster to bring new models into CPDN.

Hope that's useful.
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AndreyOR

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Message 66381 - Posted: 13 Nov 2022, 10:16:43 UTC - in response to Message 66374.  

Glenn, I understand your set up a bit better, you actually have a dual disk PC. You said that OpenIFS works with your setup, I'm assuming other projects you run work too? I've never done anything like this with WSL2 as I have a simpler setup, just one SSD. The fact that you got other projects to work tells me that it's not as complicated as I originally thought. It seems like it's a niche problem that's likely just relevant for you, just like for me not being able to figure out how to run LHC ATLAS multi-core on WSL2 (runs single-core just fine). At least I can run ATLAS even if only single-core, for you Hadley models won't even run. It'd be interesting to see if you'll get a chance to find a fix. Otherwise you could try to just create WSL2 on HDD and run BOINC from there. From a resource usage perspective, virtualizing with WSL2 is probably the best option (compared to Type 2 hypervisors or even Hyper-V).

Have you done any modifications of your CPDN directory on HDD from Windows? From some reading, it seems like that can be one of the things that can make things inaccessible from WSL2.

Both of my PCs are HP pre-builts also. I maxed out the RAM and upgraded to the best CPU they'll support, luckily with no issues.
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Profile Alan K

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Message 66387 - Posted: 13 Nov 2022, 23:36:20 UTC - in response to Message 65966.  

I'll just try it an see if it works then.


Apparently did work. However just switched my machine back on in the hope of getting some of the latest batch (after energy saving pause). When tried to start BOINC it absolutely refused to co-operate (Ubuntu 22.04 and BOINC version 7.18.1). Have reverted to 20.04 but got BOINC version 7.16.1 installed via the apt-get method. Fingers crossed for some work.
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Jean-David Beyer

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Message 66389 - Posted: 14 Nov 2022, 1:36:00 UTC - in response to Message 66380.  

Hope that's useful.


Yes, very much. Much of it I have figured out. But your reply as much better organized than my mental model of what is going on.

I am still confused a little. Consider these files that seem to go together:
-rwxr-xr-x. 1 boinc boinc 2749224 Mar 31  2021 hadsm4_8.02_i686-pc-linux-gnu
-rw-r--r--. 1 boinc boinc    1317 Nov 13 20:11 hadsm4_a0ji_201311_4_938_012155264.xml
-rw-r--r--. 1 boinc boinc    7303 Nov 11 07:25 hadsm4_a0ji_201311_4_938_012155264.zip
-rwxr-xr-x. 1 boinc boinc   77088 Dec 18  2021 hadsm4_data_8.02_i686-pc-linux-gnu.zip
-rwxrwxr-x. 1 boinc boinc 2692682 Jan 18  2021 hadsm4_se_8.02_i686-pc-linux-gnu.so
-rwxr-xr-x. 1 boinc boinc  916868 Dec 18  2021 hadsm4_se_8.02_i686-pc-linux-gnu.zip
-rwxrwxr-x. 1 boinc boinc 6705808 Jan 18  2021 hadsm4_um_8.02_i686-pc-linux-gnu
-rwxr-xr-x. 1 boinc boinc 2789337 Mar 31  2021 hadsm4_um_8.02_i686-pc-linux-gnu.zip

You explained hadsm4_8.02_i686-pc-linux-gnu
and hadsm4_um_8.02_i686-pc-linux-gnu but then what are the ones like hadsm4_se_8.02_i686-pc-linux-gnu.so?
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Message 66390 - Posted: 14 Nov 2022, 4:01:12 UTC - in response to Message 66389.  

You explained hadsm4_8.02_i686-pc-linux-gnu and hadsm4_um_8.02_i686-pc-linux-gnu but then what are the ones like hadsm4_se_8.02_i686-pc-linux-gnu.so?

The .so files are somehow involved in the creation or zipping of output files for uploading. The libnsl.so.1 file is a dependency needed by hadsm4_se_8.02_i686-pc-linux-gnu.so and without it being installed, the model errors out at the end because it couldn't find the expected upload file/files.
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Richard Haselgrove

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Message 66391 - Posted: 14 Nov 2022, 7:45:33 UTC - in response to Message 66387.  

When tried to start BOINC it absolutely refused to co-operate (Ubuntu 22.04 and BOINC version 7.18.1).
It's reports like that (and you're not alone - many people are in the same boat) that led to my remarks in message 66354.
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Glenn Carver

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Message 66395 - Posted: 14 Nov 2022, 15:36:24 UTC - in response to Message 66389.  
Last modified: 14 Nov 2022, 15:40:57 UTC

...but then what are the ones like hadsm4_se_8.02_i686-pc-linux-gnu.so?
Command:
nm -D --defined-only *se*.so
lists references to the netCDF library. So it's part of the model output processing.
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Message 66397 - Posted: 14 Nov 2022, 17:02:53 UTC - in response to Message 66326.  
Last modified: 14 Nov 2022, 17:51:36 UTC

Try running "apt update" before the command for to install BOINC.


I failed "apt update" but in the end got Boinc-manager Boinc-client. 7.16.6 version

arif@arif-VirtualBox:~$ apt update
Reading package lists... Done
E: Could not open lock file /var/lib/apt/lists/lock - open (13: Permission denied)
E: Unable to lock directory /var/lib/apt/lists/
W: Problem unlinking the file /var/cache/apt/pkgcache.bin - RemoveCaches (13: Permission denied)
W: Problem unlinking the file /var/cache/apt/srcpkgcache.bin - RemoveCaches (13: Permission denied)

Now the 32bit libs.
sudo apt-get install gcc-4.7-multilib libstdc++6 libstdc++5 freeglut3 lib32z1 lib32ncurses5 lib32bz2-1.0
[sudo] password for arif:
Reading package lists... Done
Building dependency tree
Reading state information... Done
E: Unable to locate package gcc-4.7-multilib
E: Couldn't find any package by glob 'gcc-4.7-multilib'
E: Couldn't find any package by regex 'gcc-4.7-multilib'
E: Unable to locate package lib32ncurses5
E: Unable to locate package lib32bz2-1.0
E: Couldn't find any package by glob 'lib32bz2-1.0'
E: Couldn't find any package by regex 'lib32bz2-1.0'

Changed some commands
~$ sudo apt install gcc-4.7-multilib libstdc++6 libstdc++5 freeglut3 lib32zl lib32ncurses5 lib32bz2-1.0
Reading package lists... Done
Building dependency tree
Reading state information... Done
E: Unable to locate package gcc-4.7-multilib
E: Couldn't find any package by glob 'gcc-4.7-multilib'
E: Unable to locate package lib32zl
E: Unable to locate package lib32ncurses5
E: Unable to locate package lib32bz2-1.0
E: Couldn't find any package by glob 'lib32bz2-1.0'
arif@arif-VirtualBox:~$ sudo apt-get install gcc-4.7-multilib libstdc++6 libstdc++5 freeglut3 lib32z1 lib32ncurses5 lib32bz2-1.0
Reading package lists... Done
Building dependency tree
Reading state information... Done
E: Unable to locate package gcc-4.7-multilib
E: Couldn't find any package by glob 'gcc-4.7-multilib'
E: Couldn't find any package by regex 'gcc-4.7-multilib'
E: Unable to locate package lib32ncurses5
E: Unable to locate package lib32bz2-1.0
E: Couldn't find any package by glob 'lib32bz2-1.0'
E: Couldn't find any package by regex 'lib32bz2-1.0'
arif@arif-VirtualBox:~$ [sudo] password for arif:
[sudo]: command not found
arif@arif-VirtualBox:~$ Reading package lists... Done
Reading: command not found
arif@arif-VirtualBox:~$ Building dependency tree
Building: command not found
arif@arif-VirtualBox:~$ Reading state information... Done
Reading: command not found
arif@arif-VirtualBox:~$ E: Unable to locate package gcc-4.7-multilib
E:: command not found
arif@arif-VirtualBox:~$ E: Couldn't find any package by glob 'gcc-4.7-multilib'
> E: Couldn't find any package by regex 'gcc-4.7-multilib'
E:: command not found
arif@arif-VirtualBox:~$ E: Unable to locate package lib32ncurses5
E:: command not found
arif@arif-VirtualBox:~$ E: Unable to locate package lib32bz2-1.0
E:: command not found
arif@arif-VirtualBox:~$ E: Couldn't find any package by glob 'lib32bz2-1.0'
> Building dependency tree
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KAMasud

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Message 66399 - Posted: 14 Nov 2022, 18:08:17 UTC

I hope it works.

rif@arif-VirtualBox:~$ sudo apt-get install ia32-libs libstdc++6 libstdc++5 freeglut3
[sudo] password for arif:
Reading package lists... Done
Building dependency tree
Reading state information... Done
Package ia32-libs is not available, but is referred to by another package.
This may mean that the package is missing, has been obsoleted, or
is only available from another source
However the following packages replace it:
lib32z1

E: Package 'ia32-libs' has no installation candidate
arif@arif-VirtualBox:~$ sudo apt-get install lib32z1
Reading package lists... Done
Building dependency tree
Reading state information... Done
The following additional packages will be installed:
libc6-i386
The following NEW packages will be installed:
lib32z1 libc6-i386
0 upgraded, 2 newly installed, 0 to remove and 21 not upgraded.
Need to get 2,787 kB of archives.
After this operation, 14.9 MB of additional disk space will be used.
Do you want to continue? [Y/n] y
Get:1 http://pk.archive.ubuntu.com/ubuntu focal-updates/main amd64 libc6-i386 amd64 2.31-0ubuntu9.9 [2,730 kB]
Get:2 http://pk.archive.ubuntu.com/ubuntu focal-updates/main amd64 lib32z1 amd64 1:1.2.11.dfsg-2ubuntu1.5 [57.1 kB]
Fetched 2,787 kB in 13s (210 kB/s)
Selecting previously unselected package libc6-i386.
(Reading database ... 227580 files and directories currently installed.)
Preparing to unpack .../libc6-i386_2.31-0ubuntu9.9_amd64.deb ...
Unpacking libc6-i386 (2.31-0ubuntu9.9) ...
Selecting previously unselected package lib32z1.
Preparing to unpack .../lib32z1_1%3a1.2.11.dfsg-2ubuntu1.5_amd64.deb ...
Unpacking lib32z1 (1:1.2.11.dfsg-2ubuntu1.5) ...
Setting up libc6-i386 (2.31-0ubuntu9.9) ...
Setting up lib32z1 (1:1.2.11.dfsg-2ubuntu1.5) ...
Processing triggers for libc-bin (2.31-0ubuntu9.9) ...
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Glenn Carver

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Message 66400 - Posted: 14 Nov 2022, 18:25:00 UTC - in response to Message 66397.  

arif@arif-VirtualBox:~$ apt update
This needs to be 'sudo apt ...'. Yes, I agree about the aptitude instructions. I first installed that way and it although it worked it was clumsy, and aptitude uses a separate install database which I didn't particularly like. So I dropped it and now just use:
sudo apt install boinc-client boinc-manager

on Mint which works fine. Note, however you might need to tweak your systemctl file for boinc-client. There is a bug in the current release which prevents vbox apps working correctly (if that's required).
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Message 66403 - Posted: 15 Nov 2022, 7:34:12 UTC - in response to Message 66400.  

arif@arif-VirtualBox:~$ apt update
This needs to be 'sudo apt ...'. Yes, I agree about the aptitude instructions. I first installed that way and it although it worked it was clumsy, and aptitude uses a separate install database which I didn't particularly like. So I dropped it and now just use:
sudo apt install boinc-client boinc-manager

on Mint which works fine. Note, however you might need to tweak your systemctl file for boinc-client. There is a bug in the current release which prevents vbox apps working correctly (if that's required).


I got this on Mint.
~$ sudo apt instal boinc-client boinc-manager
[sudo] password for arif:
apt
Usage: apt command [options]
apt help command [options]

Commands:
add-repository - Add entries to apt sources.list
autoclean - Erase old downloaded archive files
autopurge - Remove packages with their configuration files and automatically remove all unused packages
autoremove - Remove automatically all unused packages
build - Build binary or source packages from sources
build-dep - Configure build-dependencies for source packages
changelog - View a package's changelog
check - Verify that there are no broken dependencies
clean - Erase downloaded archive files
contains - List packages containing a file
content - List files contained in a package
deb - Install a .deb package
depends - Show raw dependency information for a package
dist-upgrade - Upgrade the system by removing/installing/upgrading packages
download - Download the .deb file for a package
edit-sources - Edit /etc/apt/sources.list with your preferred text editor
dselect-upgrade - Follow dselect selections
full-upgrade - Same as 'dist-upgrade'
held - List all held packages
help - Show help for a command
hold - Hold a package
install - Install/upgrade packages
list - List packages based on package names
policy - Show policy settings
purge - Remove packages and their configuration files
recommends - List missing recommended packages for a particular package
rdepends - Show reverse dependency information for a package
reinstall - Download and (possibly) reinstall a currently installed package
remove - Remove packages
search - Search for a package by name and/or expression
show - Display detailed information about a package
showhold - Same as 'held'
showsrc - Display all the source package records that match the given package name
source - Download source archives
sources - Same as 'edit-sources'
unhold - Unhold a package
update - Download lists of new/upgradable packages
upgrade - Perform a safe upgrade
version - Show the installed version of a package

As to Zorin, I tried to test run Moo Wrapper. All ended in error on start up.

How do I install the Linux package from Boinc web site?
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Richard Haselgrove

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Message 66404 - Posted: 15 Nov 2022, 7:37:57 UTC - in response to Message 66403.  

~$ sudo apt instal boinc-client boinc-manager
Two 'l's in install.
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Message 66405 - Posted: 15 Nov 2022, 7:59:46 UTC - in response to Message 66404.  

~$ sudo apt instal boinc-client boinc-manager
Two 'l's in install.


sudo apt install boinc-client boinc-manager
[sudo] password for arif:
Waiting for cache lock: Could not get lock /var/lib/dpkg/lock-frontend. It is heWaiting for cache lock: Could not get lock /var/lib/dpkg/lock-frontend. It is held by process 2883 (synaptic)
Waiting for cache lock: Could not get lock /var/lib/dpkg/lock-frontend. It is heWaiting for cache lock: Could not get lock /var/lib/dpkg/lock-frontend. It is held by process 2883 (synaptic)
Waiting for cache lock: Could not get lock /var/lib/dpkg/lock-frontend. It is heWaiting for cache lock: Could not get lock /var/lib/dpkg/lock-frontend. It is held by process 2883 (synaptic)
Waiting for cache lock: Could not get lock /var/lib/dpkg/lock-frontend. It is heWaiting for cache lock: Could not get lock /var/lib/dpkg/lock-frontend. It is held by process 2883 (synaptic)
Waiting for cache lock: Could not get lock /var/lib/dpkg/lock-frontend. It is heWaiting for cache lock: Could not get lock /var/lib/dpkg/lock-frontend. It is held by process 2883 (synaptic)
Waiting for cache lock: Could not get lock /var/lib/dpkg/lock-frontend. It is heWaiting for cache lock: Could not get lock /var/lib/dpkg/lock-frontend. It is held by process 2883 (synaptic)
Waiting for cache lock: Could not get lock /var/lib/dpkg/lock-frontend. It is heWaiting for cache lock: Could not get lock /var/lib/dpkg/lock-frontend. It is held by process 2883 (synaptic)
and it is still going on.
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Message 66406 - Posted: 15 Nov 2022, 8:16:36 UTC - in response to Message 66405.  

Reboot the system and then try again.
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Profile Dave Jackson
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Message 66407 - Posted: 15 Nov 2022, 8:19:47 UTC
Last modified: 15 Nov 2022, 8:20:39 UTC

Waiting for cache lock: Could not get lock /var/lib/dpkg/lock-frontend. It is heWaiting for cache lock: Could not get lock /var/lib/dpkg/lock-frontend. It is held by process 2883 (synaptic)
The key is the last bit. apt is already running. If it doesn't finish in a reasonable amount of time allowing you to try again, stop the process that is stopping your instance of apt from running with

sudo kill 2883
Could that be from running it with the, "l" missing?

Edit: Glen's suggestion of rebooting would also get rid of the process already running.
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Message 66411 - Posted: 15 Nov 2022, 11:17:46 UTC - in response to Message 66406.  

Reboot the system and then try again.


I tried plus tried to reinstall Boinc Manager and Boinc Client. It reported back, you already have the latest version but I cannot see the GUI. I am going to do a fresh install of Mint and then try again.
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Message 66412 - Posted: 15 Nov 2022, 11:20:38 UTC
Last modified: 15 Nov 2022, 11:28:15 UTC

If you're going to do a fresh install, try using the GUI software manager to install BOINC. Richard seems to have had success with it.

Just to share info, BOINC 7.18.1 (client only, don't have the manager) works on Ubuntu 22.04 on WSL2.
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