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Task 22279169

Task 22279169

Name oifs_43r3_ps_0738_2007050100_123_976_12193382_0
Workunit 12193382
Created 23 Dec 2022, 16:35:14 UTC
Sent 23 Dec 2022, 16:36:01 UTC
Report deadline 22 Jan 2023, 16:36:01 UTC
Received 15 Jan 2023, 12:00:32 UTC
Server state Over
Outcome Computation error
Client state Compute error
Exit status 5 (0x00000005) Unknown error code
Computer ID 1536300
Run time 30 min 25 sec
CPU time 29 min 58 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 6.12 GFLOPS
Application version OpenIFS 43r3 Perturbed Surface v1.05
x86_64-pc-linux-gnu
Peak working set size 3,802.54 MB
Peak swap size 4,260.25 MB
Peak disk usage 111.54 MB
Stderr
<core_client_version>7.16.6</core_client_version>
<![CDATA[
<message>
process exited with code 5 (0x5, -251)</message>
<stderr_txt>
(argv0) ../../projects/climateprediction.net/oifs_43r3_ps_1.05_x86_64-pc-linux-gnu
(argv1) start_date: 2007050100
(argv2) exptid: hq0f
(argv3) unique_member_id: 0738
(argv4) batchid: 976
(argv5) wuid: 12193382
(argv6) fclen: 123
(argv7) app_name: oifs_43r3_ps
(argv8) nthreads: 1
Working directory is: /var/lib/boinc-client/slots/3
Project directory is: /var/lib/boinc-client/projects/climateprediction.net/
app name: oifs_43r3_ps
version: 1.05
Location of temp folder: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12193382
Copying: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_app_1.05_x86_64-pc-linux-gnu.zip to: /var/lib/boinc-client/slots/3/oifs_43r3_ps_app_1.05_x86_64-pc-linux-gnu.zip
Unzipping the app zip file: /var/lib/boinc-client/slots/3/oifs_43r3_ps_app_1.05_x86_64-pc-linux-gnu.zip
Copying the namelist files from: ../../projects/climateprediction.net/jf_3c9117e3046fa3425aeeaaa18a4e41d1 to: /var/lib/boinc-client/slots/3/oifs_43r3_ps_0738_2007050100_123_976_12193382.zip
Unzipping the namelist zip file: /var/lib/boinc-client/slots/3/oifs_43r3_ps_0738_2007050100_123_976_12193382.zip
ic_ancil_file: ic_ancil_12193382
ifsdata_file: ifsdata_12193382
climate_data_file: clim_data_12193382
horiz_resolution: 159
vert_resolution: 60
grid_type: l_2
upload_interval: 24
utstep: 3600
nfrres: restart dump frequency (steps) 24
Copying IC ancils from: ../../projects/climateprediction.net/jf_0cd4f585730e0d66a644d85f34fbff9d to: /var/lib/boinc-client/slots/3/ic_ancil_12193382.zip
Unzipping the IC ancils zip file: /var/lib/boinc-client/slots/3/ic_ancil_12193382.zip
Copying the ifsdata_file from: ../../projects/climateprediction.net/jf_ad8712a426bf2a25d4c6f850f4f40695 to: /var/lib/boinc-client/slots/3/ifsdata/ifsdata_12193382.zip
Unzipping the ifsdata_zip file: /var/lib/boinc-client/slots/3/ifsdata/ifsdata_12193382.zip
Copying the climate data file from: ../../projects/climateprediction.net/jf_f32c668cf7829426ffd94699b48b9a2e to: /var/lib/boinc-client/slots/3/159l_2/clim_data_12193382.zip
Unzipping the climate data zip file: /var/lib/boinc-client/slots/3/159l_2/clim_data_12193382.zip
Checking for progress XML file: /var/lib/boinc-client/slots/3/progress_file_12193382.xml
Creating progress file: /var/lib/boinc-client/slots/3/progress_file_12193382.xml
last_cpu_time: 0
upload_file_number: 0
last_iter: 0
last_upload: 0
model_completed: 0
total_length_of_simulation: 10627200
result_base_name: oifs_43r3_ps_0738_2007050100_123_976_12193382_0_r917327634
The child process has been launched with process id: 14335
Executing the command: /var/lib/boinc-client/slots/3/oifs_43r3_model.exe
[EC_DRHOOK:hostname:myproc:omptid:pid:unixtid] [YYYYMMDD:HHMMSS:epoch:walltime] [function@file:lineno] -- Max OpenMP threads = 1
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2091] fp = 0x3129fe0
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2098] DR_HOOK_ALLOW_COREDUMP=-1
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2104] Hardlimit for core file is now 0 (0x0)
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2122] DR_HOOK_PROFILE_PROC=-1
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2128] DR_HOOK_PROFILE_LIMIT=-10.000
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2194] DR_HOOK_RANDOM_MEMSTAT=0  (RAND_MAX=2147483647)
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2205] DR_HOOK_HASHBITS=16
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2213] DR_HOOK_NCALLSTACK=0
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2221] DR_HOOK_HARAKIRI_TIMEOUT=500
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2228] DR_HOOK_TRAPFPE=1
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2235] DR_HOOK_TRAPFPE_INVALID=1
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2242] DR_HOOK_TRAPFPE_DIVBYZERO=1
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2249] DR_HOOK_TRAPFPE_OVERFLOW=1
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [ignore_signals@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1227] DR_HOOK_IGNORE_SIGNALS=<undef>
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [restore_default_signals@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1178] DR_HOOK_RESTORE_DEFAULT_SIGNALS=<undef>
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1937] New signal handler 'signal_drhook' for signal#6 (SIGABRT) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1938] New signal handler 'signal_drhook' for signal#7 (SIGBUS) at 0x81f820 (old at (nil))
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1939] New signal handler 'signal_drhook' for signal#11 (SIGSEGV) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1944] New signal handler 'signal_drhook' for signal#16 (SIGSTKFLT) at 0x81f820 (old at (nil))
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [trapfpe_treatment@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1149] DR_HOOK enables SIGFPE-related floating point trapping since DRHOOK_TRAPFPE=1
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1948] New signal handler 'signal_drhook' for signal#8 (SIGFPE) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1949] New signal handler 'signal_drhook' for signal#4 (SIGILL) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1951] New signal handler 'signal_drhook' for signal#5 (SIGTRAP) at 0x81f820 (old at (nil))
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1952] New signal handler 'signal_drhook' for signal#2 (SIGINT) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1960] New signal handler 'signal_drhook' for signal#3 (SIGQUIT) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1961] New signal handler 'signal_drhook' for signal#15 (SIGTERM) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1966] New signal handler 'signal_drhook' for signal#24 (SIGXCPU) at 0x81f820 (old at (nil))
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1968] New signal handler 'signal_drhook' for signal#25 (SIGXFSZ) at 0x81f820 (old at (nil))
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1973] New signal handler 'signal_drhook' for signal#31 (SIGSYS) at 0x81f820 (old at (nil))
[EC_DRHOOK:ubuntu:1:1:14335:14335] [20230115:103936:1673779176:0.000] [catch_signals@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1111] DR_HOOK_CATCH_SIGNALS=<undef>
  10:40:12 STEP    0 H=   0:00 +CPU= 32.543
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMGGhq0f+000000
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMSHhq0f+000000
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMUAhq0f+000000
  10:40:36 STEP    1 H=   1:00 +CPU= 23.957
  10:40:56 STEP    2 H=   2:00 +CPU= 19.886
  10:41:27 STEP    3 H=   3:00 +CPU= 30.016
  10:41:47 STEP    4 H=   4:00 +CPU= 20.280
  10:42:07 STEP    5 H=   5:00 +CPU= 19.446
  10:42:37 STEP    6 H=   6:00 +CPU= 30.311
  10:42:57 STEP    7 H=   7:00 +CPU= 19.732
  10:43:17 STEP    8 H=   8:00 +CPU= 19.786
  10:43:47 STEP    9 H=   9:00 +CPU= 29.750
  10:44:08 STEP   10 H=  10:00 +CPU= 20.192
  10:44:27 STEP   11 H=  11:00 +CPU= 19.314
  10:45:00 STEP   12 H=  12:00 +CPU= 32.731
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMGGhq0f+000012
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMSHhq0f+000012
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMUAhq0f+000012
  10:45:20 STEP   13 H=  13:00 +CPU= 19.490
  10:45:40 STEP   14 H=  14:00 +CPU= 19.761
  10:46:10 STEP   15 H=  15:00 +CPU= 29.412
  10:46:30 STEP   16 H=  16:00 +CPU= 20.092
  10:46:50 STEP   17 H=  17:00 +CPU= 19.180
  10:47:20 STEP   18 H=  18:00 +CPU= 29.867
  10:47:40 STEP   19 H=  19:00 +CPU= 19.359
  10:47:59 STEP   20 H=  20:00 +CPU= 19.727
  10:48:29 STEP   21 H=  21:00 +CPU= 29.159
  10:48:49 STEP   22 H=  22:00 +CPU= 19.733
  10:49:09 STEP   23 H=  23:00 +CPU= 19.799
  10:49:43 STEP   24 H=  24:00 +CPU= 33.977
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMGGhq0f+000024
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMSHhq0f+000024
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMUAhq0f+000024
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12193382/ICMGGhq0f+000000
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12193382/ICMSHhq0f+000000
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12193382/ICMUAhq0f+000000
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12193382/ICMGGhq0f+000012
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12193382/ICMSHhq0f+000012
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12193382/ICMUAhq0f+000012
Zipping up the intermediate file: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_0738_2007050100_123_976_12193382_0_r917327634_0.zip
Uploading the intermediate file: upload_file_0.zip
  10:50:03 STEP   25 H=  25:00 +CPU= 19.231
  10:50:23 STEP   26 H=  26:00 +CPU= 19.533
  10:50:52 STEP   27 H=  27:00 +CPU= 29.385
  10:51:12 STEP   28 H=  28:00 +CPU= 20.162
  10:51:32 STEP   29 H=  29:00 +CPU= 19.305
  10:52:02 STEP   30 H=  30:00 +CPU= 30.057
  10:52:22 STEP   31 H=  31:00 +CPU= 19.509
  10:52:42 STEP   32 H=  32:00 +CPU= 19.660
  10:53:11 STEP   33 H=  33:00 +CPU= 29.267
  10:53:32 STEP   34 H=  34:00 +CPU= 20.106
  10:53:51 STEP   35 H=  35:00 +CPU= 19.170
  10:54:24 STEP   36 H=  36:00 +CPU= 32.471
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMGGhq0f+000036
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMSHhq0f+000036
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMUAhq0f+000036
  10:54:44 STEP   37 H=  37:00 +CPU= 19.529
  10:55:04 STEP   38 H=  38:00 +CPU= 19.810
  10:55:33 STEP   39 H=  39:00 +CPU= 29.132
  10:55:54 STEP   40 H=  40:00 +CPU= 20.030
  10:56:13 STEP   41 H=  41:00 +CPU= 19.241
  10:56:43 STEP   42 H=  42:00 +CPU= 29.883
  10:57:03 STEP   43 H=  43:00 +CPU= 19.509
  10:57:23 STEP   44 H=  44:00 +CPU= 19.927
  10:57:53 STEP   45 H=  45:00 +CPU= 29.307
  10:58:13 STEP   46 H=  46:00 +CPU= 20.052
  10:58:33 STEP   47 H=  47:00 +CPU= 20.000
  10:59:08 STEP   48 H=  48:00 +CPU= 34.302
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMGGhq0f+000048
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMSHhq0f+000048
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMUAhq0f+000048
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12193382/ICMGGhq0f+000024
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12193382/ICMSHhq0f+000024
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12193382/ICMUAhq0f+000024
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12193382/ICMGGhq0f+000036
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12193382/ICMSHhq0f+000036
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12193382/ICMUAhq0f+000036
Zipping up the intermediate file: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_0738_2007050100_123_976_12193382_0_r917327634_1.zip
Uploading the intermediate file: upload_file_1.zip
  10:59:28 STEP   49 H=  49:00 +CPU= 19.370
  10:59:48 STEP   50 H=  50:00 +CPU= 19.788
  11:00:17 STEP   51 H=  51:00 +CPU= 29.249
  11:00:38 STEP   52 H=  52:00 +CPU= 20.109
  11:00:57 STEP   53 H=  53:00 +CPU= 19.213
  11:01:27 STEP   54 H=  54:00 +CPU= 29.991
  11:01:47 STEP   55 H=  55:00 +CPU= 19.608
  11:02:07 STEP   56 H=  56:00 +CPU= 19.913
  11:02:37 STEP   57 H=  57:00 +CPU= 29.563
  11:02:58 STEP   58 H=  58:00 +CPU= 20.190
  11:03:17 STEP   59 H=  59:00 +CPU= 19.488
  11:03:50 STEP   60 H=  60:00 +CPU= 32.666
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMGGhq0f+000060
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMSHhq0f+000060
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMUAhq0f+000060
  11:04:10 STEP   61 H=  61:00 +CPU= 19.589
  11:04:30 STEP   62 H=  62:00 +CPU= 19.808
  11:05:00 STEP   63 H=  63:00 +CPU= 29.235
  11:05:20 STEP   64 H=  64:00 +CPU= 19.919
  11:05:39 STEP   65 H=  65:00 +CPU= 19.239
  11:06:09 STEP   66 H=  66:00 +CPU= 29.816
  11:06:29 STEP   67 H=  67:00 +CPU= 19.374
  11:06:49 STEP   68 H=  68:00 +CPU= 19.765
  11:07:18 STEP   69 H=  69:00 +CPU= 29.160
  11:07:39 STEP   70 H=  70:00 +CPU= 19.849
  11:07:59 STEP   71 H=  71:00 +CPU= 19.965
  11:08:33 STEP   72 H=  72:00 +CPU= 34.241
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMGGhq0f+000072
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMSHhq0f+000072
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMUAhq0f+000072
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12193382/ICMGGhq0f+000048
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12193382/ICMSHhq0f+000048
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12193382/ICMUAhq0f+000048
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12193382/ICMGGhq0f+000060
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12193382/ICMSHhq0f+000060
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12193382/ICMUAhq0f+000060
Zipping up the intermediate file: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_0738_2007050100_123_976_12193382_0_r917327634_2.zip
Uploading the intermediate file: upload_file_2.zip
  11:08:53 STEP   73 H=  73:00 +CPU= 19.152
  11:09:13 STEP   74 H=  74:00 +CPU= 19.692
  11:09:42 STEP   75 H=  75:00 +CPU= 28.802
free(): invalid pointer
double free or corruption (out)

</stderr_txt>
]]>
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