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Task 22278189

Task 22278189

Name oifs_43r3_ps_0804_2006050100_123_975_12192448_0
Workunit 12192448
Created 23 Dec 2022, 14:07:53 UTC
Sent 14 Jan 2023, 6:11:12 UTC
Report deadline 13 Feb 2023, 6:11:12 UTC
Received 19 Jan 2023, 2:36:53 UTC
Server state Over
Outcome Computation error
Client state Compute error
Exit status 5 (0x00000005) Unknown error code
Computer ID 1536300
Run time 30 min 24 sec
CPU time 30 min 1 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 6.29 GFLOPS
Application version OpenIFS 43r3 Perturbed Surface v1.05
x86_64-pc-linux-gnu
Peak working set size 4,412.38 MB
Peak swap size 4,974.12 MB
Peak disk usage 120.42 MB
Stderr
<core_client_version>7.20.5</core_client_version>
<![CDATA[
<message>
process exited with code 5 (0x5, -251)</message>
<stderr_txt>
(argv0) ../../projects/climateprediction.net/oifs_43r3_ps_1.05_x86_64-pc-linux-gnu
(argv1) start_date: 2006050100
(argv2) exptid: hq0f
(argv3) unique_member_id: 0804
(argv4) batchid: 975
(argv5) wuid: 12192448
(argv6) fclen: 123
(argv7) app_name: oifs_43r3_ps
(argv8) nthreads: 1
Working directory is: /var/lib/boinc-client/slots/3
Project directory is: /var/lib/boinc-client/projects/climateprediction.net/
app name: oifs_43r3_ps
version: 1.05
Location of temp folder: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12192448
Copying: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_app_1.05_x86_64-pc-linux-gnu.zip to: /var/lib/boinc-client/slots/3/oifs_43r3_ps_app_1.05_x86_64-pc-linux-gnu.zip
Unzipping the app zip file: /var/lib/boinc-client/slots/3/oifs_43r3_ps_app_1.05_x86_64-pc-linux-gnu.zip
Copying the namelist files from: ../../projects/climateprediction.net/jf_b16e54727f2661ff51fdb8e57ea57f13 to: /var/lib/boinc-client/slots/3/oifs_43r3_ps_0804_2006050100_123_975_12192448.zip
Unzipping the namelist zip file: /var/lib/boinc-client/slots/3/oifs_43r3_ps_0804_2006050100_123_975_12192448.zip
ic_ancil_file: ic_ancil_12192448
ifsdata_file: ifsdata_12192448
climate_data_file: clim_data_12192448
horiz_resolution: 159
vert_resolution: 60
grid_type: l_2
upload_interval: 24
utstep: 3600
nfrres: restart dump frequency (steps) 24
Copying IC ancils from: ../../projects/climateprediction.net/jf_662d4fcdece98b7d9b03fdd964284636 to: /var/lib/boinc-client/slots/3/ic_ancil_12192448.zip
Unzipping the IC ancils zip file: /var/lib/boinc-client/slots/3/ic_ancil_12192448.zip
Copying the ifsdata_file from: ../../projects/climateprediction.net/jf_5e887095ebdc95267e6e18a55a532936 to: /var/lib/boinc-client/slots/3/ifsdata/ifsdata_12192448.zip
Unzipping the ifsdata_zip file: /var/lib/boinc-client/slots/3/ifsdata/ifsdata_12192448.zip
Copying the climate data file from: ../../projects/climateprediction.net/jf_f32c668cf7829426ffd94699b48b9a2e to: /var/lib/boinc-client/slots/3/159l_2/clim_data_12192448.zip
Unzipping the climate data zip file: /var/lib/boinc-client/slots/3/159l_2/clim_data_12192448.zip
Checking for progress XML file: /var/lib/boinc-client/slots/3/progress_file_12192448.xml
Creating progress file: /var/lib/boinc-client/slots/3/progress_file_12192448.xml
last_cpu_time: 0
upload_file_number: 0
last_iter: 0
last_upload: 0
model_completed: 0
total_length_of_simulation: 10627200
result_base_name: oifs_43r3_ps_0804_2006050100_123_975_12192448_0_r454767108
The child process has been launched with process id: 10989
Executing the command: /var/lib/boinc-client/slots/3/oifs_43r3_model.exe
[EC_DRHOOK:hostname:myproc:omptid:pid:unixtid] [YYYYMMDD:HHMMSS:epoch:walltime] [function@file:lineno] -- Max OpenMP threads = 1
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2091] fp = 0x3129fe0
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2098] DR_HOOK_ALLOW_COREDUMP=-1
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2104] Hardlimit for core file is now 0 (0x0)
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2122] DR_HOOK_PROFILE_PROC=-1
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2128] DR_HOOK_PROFILE_LIMIT=-10.000
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2194] DR_HOOK_RANDOM_MEMSTAT=0  (RAND_MAX=2147483647)
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2205] DR_HOOK_HASHBITS=16
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2213] DR_HOOK_NCALLSTACK=0
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2221] DR_HOOK_HARAKIRI_TIMEOUT=500
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2228] DR_HOOK_TRAPFPE=1
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2235] DR_HOOK_TRAPFPE_INVALID=1
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2242] DR_HOOK_TRAPFPE_DIVBYZERO=1
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2249] DR_HOOK_TRAPFPE_OVERFLOW=1
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [ignore_signals@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1227] DR_HOOK_IGNORE_SIGNALS=<undef>
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [restore_default_signals@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1178] DR_HOOK_RESTORE_DEFAULT_SIGNALS=<undef>
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1937] New signal handler 'signal_drhook' for signal#6 (SIGABRT) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1938] New signal handler 'signal_drhook' for signal#7 (SIGBUS) at 0x81f820 (old at (nil))
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1939] New signal handler 'signal_drhook' for signal#11 (SIGSEGV) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1944] New signal handler 'signal_drhook' for signal#16 (SIGSTKFLT) at 0x81f820 (old at (nil))
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [trapfpe_treatment@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1149] DR_HOOK enables SIGFPE-related floating point trapping since DRHOOK_TRAPFPE=1
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1948] New signal handler 'signal_drhook' for signal#8 (SIGFPE) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1949] New signal handler 'signal_drhook' for signal#4 (SIGILL) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1951] New signal handler 'signal_drhook' for signal#5 (SIGTRAP) at 0x81f820 (old at (nil))
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1952] New signal handler 'signal_drhook' for signal#2 (SIGINT) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1960] New signal handler 'signal_drhook' for signal#3 (SIGQUIT) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1961] New signal handler 'signal_drhook' for signal#15 (SIGTERM) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1966] New signal handler 'signal_drhook' for signal#24 (SIGXCPU) at 0x81f820 (old at (nil))
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1968] New signal handler 'signal_drhook' for signal#25 (SIGXFSZ) at 0x81f820 (old at (nil))
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1973] New signal handler 'signal_drhook' for signal#31 (SIGSYS) at 0x81f820 (old at (nil))
[EC_DRHOOK:ubuntu:1:1:10989:10989] [20230119:014551:1674092751:0.000] [catch_signals@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1111] DR_HOOK_CATCH_SIGNALS=<undef>
  01:46:25 STEP    0 H=   0:00 +CPU= 31.876
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMGGhq0f+000000
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMSHhq0f+000000
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMUAhq0f+000000
  01:46:48 STEP    1 H=   1:00 +CPU= 23.482
  01:47:09 STEP    2 H=   2:00 +CPU= 20.406
  01:47:39 STEP    3 H=   3:00 +CPU= 30.083
  01:48:00 STEP    4 H=   4:00 +CPU= 20.126
  01:48:20 STEP    5 H=   5:00 +CPU= 19.654
  01:48:50 STEP    6 H=   6:00 +CPU= 30.426
  01:49:10 STEP    7 H=   7:00 +CPU= 19.550
  01:49:30 STEP    8 H=   8:00 +CPU= 20.269
  01:50:01 STEP    9 H=   9:00 +CPU= 29.911
  01:50:21 STEP   10 H=  10:00 +CPU= 20.008
  01:50:41 STEP   11 H=  11:00 +CPU= 19.749
  01:51:14 STEP   12 H=  12:00 +CPU= 32.923
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMGGhq0f+000012
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMSHhq0f+000012
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMUAhq0f+000012
  01:51:34 STEP   13 H=  13:00 +CPU= 19.464
  01:51:54 STEP   14 H=  14:00 +CPU= 20.145
  01:52:24 STEP   15 H=  15:00 +CPU= 29.382
  01:52:44 STEP   16 H=  16:00 +CPU= 20.083
  01:53:04 STEP   17 H=  17:00 +CPU= 19.571
  01:53:34 STEP   18 H=  18:00 +CPU= 30.267
  01:53:54 STEP   19 H=  19:00 +CPU= 19.505
  01:54:15 STEP   20 H=  20:00 +CPU= 20.199
  01:54:44 STEP   21 H=  21:00 +CPU= 29.546
  01:55:05 STEP   22 H=  22:00 +CPU= 20.039
  01:55:25 STEP   23 H=  23:00 +CPU= 20.200
  01:56:00 STEP   24 H=  24:00 +CPU= 34.728
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMGGhq0f+000024
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMSHhq0f+000024
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMUAhq0f+000024
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12192448/ICMGGhq0f+000000
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12192448/ICMSHhq0f+000000
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12192448/ICMUAhq0f+000000
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12192448/ICMGGhq0f+000012
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12192448/ICMSHhq0f+000012
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12192448/ICMUAhq0f+000012
Zipping up the intermediate file: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_0804_2006050100_123_975_12192448_0_r454767108_0.zip
Uploading the intermediate file: upload_file_0.zip
  01:56:20 STEP   25 H=  25:00 +CPU= 19.441
  01:56:40 STEP   26 H=  26:00 +CPU= 20.006
  01:57:09 STEP   27 H=  27:00 +CPU= 29.297
  01:57:29 STEP   28 H=  28:00 +CPU= 19.850
  01:57:49 STEP   29 H=  29:00 +CPU= 19.401
  01:58:19 STEP   30 H=  30:00 +CPU= 30.193
  01:58:39 STEP   31 H=  31:00 +CPU= 19.171
  01:58:59 STEP   32 H=  32:00 +CPU= 20.078
  01:59:29 STEP   33 H=  33:00 +CPU= 29.569
  01:59:49 STEP   34 H=  34:00 +CPU= 19.866
  02:00:08 STEP   35 H=  35:00 +CPU= 19.415
  02:00:41 STEP   36 H=  36:00 +CPU= 32.687
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMGGhq0f+000036
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMSHhq0f+000036
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMUAhq0f+000036
  02:01:01 STEP   37 H=  37:00 +CPU= 19.323
  02:01:21 STEP   38 H=  38:00 +CPU= 19.883
  02:01:51 STEP   39 H=  39:00 +CPU= 29.409
  02:02:11 STEP   40 H=  40:00 +CPU= 19.938
  02:02:31 STEP   41 H=  41:00 +CPU= 19.566
  02:03:01 STEP   42 H=  42:00 +CPU= 30.101
  02:03:21 STEP   43 H=  43:00 +CPU= 19.431
  02:03:41 STEP   44 H=  44:00 +CPU= 20.042
  02:04:11 STEP   45 H=  45:00 +CPU= 29.601
  02:04:31 STEP   46 H=  46:00 +CPU= 19.942
  02:04:51 STEP   47 H=  47:00 +CPU= 20.135
  02:05:27 STEP   48 H=  48:00 +CPU= 34.874
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMGGhq0f+000048
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMSHhq0f+000048
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMUAhq0f+000048
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12192448/ICMGGhq0f+000024
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12192448/ICMSHhq0f+000024
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12192448/ICMUAhq0f+000024
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12192448/ICMGGhq0f+000036
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12192448/ICMSHhq0f+000036
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12192448/ICMUAhq0f+000036
Zipping up the intermediate file: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_0804_2006050100_123_975_12192448_0_r454767108_1.zip
Uploading the intermediate file: upload_file_1.zip
  02:05:46 STEP   49 H=  49:00 +CPU= 19.355
  02:06:06 STEP   50 H=  50:00 +CPU= 19.932
  02:06:36 STEP   51 H=  51:00 +CPU= 29.151
  02:06:56 STEP   52 H=  52:00 +CPU= 19.643
  02:07:15 STEP   53 H=  53:00 +CPU= 19.428
  02:07:46 STEP   54 H=  54:00 +CPU= 30.039
  02:08:05 STEP   55 H=  55:00 +CPU= 19.114
  02:08:25 STEP   56 H=  56:00 +CPU= 19.916
  02:08:55 STEP   57 H=  57:00 +CPU= 29.426
  02:09:15 STEP   58 H=  58:00 +CPU= 19.823
  02:09:34 STEP   59 H=  59:00 +CPU= 19.418
  02:10:07 STEP   60 H=  60:00 +CPU= 32.489
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMGGhq0f+000060
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMSHhq0f+000060
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMUAhq0f+000060
  02:10:27 STEP   61 H=  61:00 +CPU= 19.587
  02:10:47 STEP   62 H=  62:00 +CPU= 19.949
  02:11:17 STEP   63 H=  63:00 +CPU= 29.499
  02:11:37 STEP   64 H=  64:00 +CPU= 19.998
  02:11:57 STEP   65 H=  65:00 +CPU= 19.487
  02:12:28 STEP   66 H=  66:00 +CPU= 30.393
  02:12:47 STEP   67 H=  67:00 +CPU= 19.414
  02:13:08 STEP   68 H=  68:00 +CPU= 20.141
  02:13:38 STEP   69 H=  69:00 +CPU= 29.802
  02:13:58 STEP   70 H=  70:00 +CPU= 19.977
  02:14:18 STEP   71 H=  71:00 +CPU= 20.181
  02:14:53 STEP   72 H=  72:00 +CPU= 34.902
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMGGhq0f+000072
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMSHhq0f+000072
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMUAhq0f+000072
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12192448/ICMGGhq0f+000048
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12192448/ICMSHhq0f+000048
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12192448/ICMUAhq0f+000048
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12192448/ICMGGhq0f+000060
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12192448/ICMSHhq0f+000060
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12192448/ICMUAhq0f+000060
Zipping up the intermediate file: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_0804_2006050100_123_975_12192448_0_r454767108_2.zip
Uploading the intermediate file: upload_file_2.zip
  02:15:13 STEP   73 H=  73:00 +CPU= 19.593
  02:15:34 STEP   74 H=  74:00 +CPU= 20.227
  02:16:04 STEP   75 H=  75:00 +CPU= 29.446
double free or corruption (out)
free(): invalid pointer

</stderr_txt>
]]>
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